/**
 * @claude-flow/codex - AGENTS.md Generator
 *
 * Generates AGENTS.md files for OpenAI Codex CLI
 * Following the Agentic AI Foundation standard
 */
import { BUILT_IN_SKILLS } from '../templates/index.js';
/**
 * Generate an AGENTS.md file based on the provided options
 */
export async function generateAgentsMd(options) {
    const template = options.template ?? 'default';
    switch (template) {
        case 'minimal':
            return generateMinimal(options);
        case 'full':
            return generateFull(options);
        case 'enterprise':
            return generateEnterprise(options);
        case 'default':
        default:
            return generateDefault(options);
    }
}
/**
 * Generate minimal AGENTS.md template
 */
function generateMinimal(options) {
    const { projectName, description = 'A Claude Flow powered project', buildCommand = 'npm run build', testCommand = 'npm test', } = options;
    return `# ${projectName}

> ${description}

## Quick Start

### Setup
\`\`\`bash
npm install && ${buildCommand}
\`\`\`

### Test
\`\`\`bash
${testCommand}
\`\`\`

## Agent Behavior

### Code Standards
- Keep files under 500 lines
- No hardcoded secrets or credentials
- Validate input at system boundaries
- Use typed interfaces for public APIs

### File Organization
- \`/src\` - Source code files
- \`/tests\` - Test files
- \`/docs\` - Documentation
- \`/config\` - Configuration files

## Skills

| Skill | Purpose |
|-------|---------|
| \`$swarm-orchestration\` | Multi-agent coordination for complex tasks |
| \`$memory-management\` | Pattern storage and semantic search |

## Security Rules

- NEVER commit .env files or secrets
- Always validate user inputs
- Prevent directory traversal attacks
- Use parameterized queries for databases
- Sanitize output to prevent XSS

## Links

- Documentation: https://github.com/ruvnet/claude-flow
`;
}
/**
 * Generate default AGENTS.md template
 */
function generateDefault(options) {
    const { projectName, description = 'A Claude Flow powered project', techStack = 'TypeScript, Node.js', buildCommand = 'npm run build', testCommand = 'npm test', devCommand = 'npm run dev', skills = ['swarm-orchestration', 'memory-management', 'sparc-methodology', 'security-audit'], } = options;
    const skillsTable = skills
        .map((skill) => {
        const info = BUILT_IN_SKILLS[skill];
        return info
            ? `| \`$${skill}\` | ${info.description} |`
            : `| \`$${skill}\` | Custom skill |`;
    })
        .join('\n');
    return `# ${projectName}

> Multi-agent orchestration framework for agentic coding

## Project Overview

${description}

**Tech Stack**: ${techStack}
**Architecture**: Domain-Driven Design with bounded contexts

## Quick Start

### Installation
\`\`\`bash
npm install
\`\`\`

### Build
\`\`\`bash
${buildCommand}
\`\`\`

### Test
\`\`\`bash
${testCommand}
\`\`\`

### Development
\`\`\`bash
${devCommand}
\`\`\`

## Agent Coordination

### Swarm Configuration

This project uses hierarchical swarm coordination for complex tasks:

| Setting | Value | Purpose |
|---------|-------|---------|
| Topology | \`hierarchical\` | Queen-led coordination (anti-drift) |
| Max Agents | 8 | Optimal team size |
| Strategy | \`specialized\` | Clear role boundaries |
| Consensus | \`raft\` | Leader-based consistency |

### When to Use Swarms

**Invoke swarm for:**
- Multi-file changes (3+ files)
- New feature implementation
- Cross-module refactoring
- API changes with tests
- Security-related changes
- Performance optimization

**Skip swarm for:**
- Single file edits
- Simple bug fixes (1-2 lines)
- Documentation updates
- Configuration changes

### Available Skills

Use \`$skill-name\` syntax to invoke:

| Skill | Use Case |
|-------|----------|
${skillsTable}

### Agent Types

| Type | Role | Use Case |
|------|------|----------|
| \`researcher\` | Requirements analysis | Understanding scope |
| \`architect\` | System design | Planning structure |
| \`coder\` | Implementation | Writing code |
| \`tester\` | Test creation | Quality assurance |
| \`reviewer\` | Code review | Security and quality |

## Code Standards

### File Organization
- **NEVER** save to root folder
- \`/src\` - Source code files
- \`/tests\` - Test files
- \`/docs\` - Documentation
- \`/config\` - Configuration files

### Quality Rules
- Files under 500 lines
- No hardcoded secrets
- Input validation at boundaries
- Typed interfaces for public APIs
- TDD London School (mock-first) preferred

### Commit Messages
\`\`\`
<type>(<scope>): <description>

[optional body]

Co-Authored-By: claude-flow <ruv@ruv.net>
\`\`\`

Types: \`feat\`, \`fix\`, \`docs\`, \`style\`, \`refactor\`, \`perf\`, \`test\`, \`chore\`

## Security

### Critical Rules
- NEVER commit secrets, credentials, or .env files
- NEVER hardcode API keys
- Always validate user input
- Use parameterized queries for SQL
- Sanitize output to prevent XSS

### Path Security
- Validate all file paths
- Prevent directory traversal (../)
- Use absolute paths internally

## Memory System

### Storing Patterns
\`\`\`bash
npx @claude-flow/cli memory store \\
  --key "pattern-name" \\
  --value "pattern description" \\
  --namespace patterns
\`\`\`

### Searching Memory
\`\`\`bash
npx @claude-flow/cli memory search \\
  --query "search terms" \\
  --namespace patterns
\`\`\`

## Links

- Documentation: https://github.com/ruvnet/claude-flow
- Issues: https://github.com/ruvnet/claude-flow/issues
`;
}
/**
 * Generate full AGENTS.md template with all sections
 */
function generateFull(options) {
    const base = generateDefault(options);
    const additionalSections = `
## Performance Targets

| Metric | Target | Notes |
|--------|--------|-------|
| HNSW Search | 150x-12,500x faster | Vector operations |
| Memory Reduction | 50-75% | Int8 quantization |
| MCP Response | <100ms | API latency |
| CLI Startup | <500ms | Cold start |
| SONA Adaptation | <0.05ms | Neural learning |

## Testing

### Running Tests
\`\`\`bash
# Unit tests
npm test

# Integration tests
npm run test:integration

# Coverage
npm run test:coverage

# Security tests
npm run test:security
\`\`\`

### Test Philosophy
- TDD London School (mock-first)
- Unit tests for business logic
- Integration tests for boundaries
- E2E tests for critical paths
- Security tests for sensitive operations

### Coverage Requirements
- Minimum 80% line coverage
- 100% coverage for security-critical code
- All public APIs must have tests

## MCP Integration

Claude Flow exposes tools via Model Context Protocol:

\`\`\`bash
# Start MCP server
npx @claude-flow/cli mcp start

# List available tools
npx @claude-flow/cli mcp tools
\`\`\`

### Available Tools

| Tool | Purpose | Example |
|------|---------|---------|
| \`swarm_init\` | Initialize swarm coordination | \`swarm_init({topology: "hierarchical"})\` |
| \`agent_spawn\` | Spawn new agents | \`agent_spawn({type: "coder", name: "dev-1"})\` |
| \`memory_store\` | Store in AgentDB | \`memory_store({key: "pattern", value: "..."})\` |
| \`memory_search\` | Semantic search | \`memory_search({query: "auth patterns"})\` |
| \`task_orchestrate\` | Task coordination | \`task_orchestrate({task: "implement feature"})\` |
| \`neural_train\` | Train neural patterns | \`neural_train({iterations: 10})\` |
| \`benchmark_run\` | Performance benchmarks | \`benchmark_run({type: "all"})\` |

## Hooks System

Claude Flow uses hooks for lifecycle automation:

### Core Hooks

| Hook | Trigger | Purpose |
|------|---------|---------|
| \`pre-task\` | Before task starts | Get context, load patterns |
| \`post-task\` | After task completes | Record completion, train |
| \`pre-edit\` | Before file changes | Validate, backup |
| \`post-edit\` | After file changes | Train patterns, verify |
| \`pre-command\` | Before shell commands | Security check |
| \`post-command\` | After shell commands | Log results |

### Session Hooks

| Hook | Purpose |
|------|---------|
| \`session-start\` | Initialize context, load memory |
| \`session-end\` | Export metrics, consolidate memory |
| \`session-restore\` | Resume from checkpoint |
| \`notify\` | Send notifications |

### Intelligence Hooks

| Hook | Purpose |
|------|---------|
| \`route\` | Route task to appropriate agents |
| \`explain\` | Generate explanations |
| \`pretrain\` | Pre-train neural patterns |
| \`build-agents\` | Build specialized agents |
| \`transfer\` | Transfer learning between domains |

### Example Usage
\`\`\`bash
# Before starting a task
npx @claude-flow/cli hooks pre-task \\
  --description "implementing authentication"

# After completing a task
npx @claude-flow/cli hooks post-task \\
  --task-id "task-123" \\
  --success true

# Route a task to agents
npx @claude-flow/cli hooks route \\
  --task "implement OAuth2 login flow"
\`\`\`

## Background Workers

12 background workers provide continuous optimization:

| Worker | Priority | Purpose |
|--------|----------|---------|
| \`ultralearn\` | normal | Deep knowledge acquisition |
| \`optimize\` | high | Performance optimization |
| \`consolidate\` | low | Memory consolidation |
| \`predict\` | normal | Predictive preloading |
| \`audit\` | critical | Security analysis |
| \`map\` | normal | Codebase mapping |
| \`preload\` | low | Resource preloading |
| \`deepdive\` | normal | Deep code analysis |
| \`document\` | normal | Auto-documentation |
| \`refactor\` | normal | Refactoring suggestions |
| \`benchmark\` | normal | Performance benchmarking |
| \`testgaps\` | normal | Test coverage analysis |

### Managing Workers
\`\`\`bash
# List workers
npx @claude-flow/cli hooks worker list

# Trigger specific worker
npx @claude-flow/cli hooks worker dispatch --trigger audit

# Check worker status
npx @claude-flow/cli hooks worker status
\`\`\`

## Intelligence System

The RuVector Intelligence System provides neural learning:

### Components
- **SONA**: Self-Optimizing Neural Architecture (<0.05ms adaptation)
- **MoE**: Mixture of Experts for specialized routing
- **HNSW**: Hierarchical Navigable Small World for fast search
- **EWC++**: Elastic Weight Consolidation (prevents forgetting)
- **Flash Attention**: Optimized attention mechanism

### 4-Step Pipeline
1. **RETRIEVE** - Fetch relevant patterns via HNSW
2. **JUDGE** - Evaluate with verdicts (success/failure)
3. **DISTILL** - Extract key learnings via LoRA
4. **CONSOLIDATE** - Prevent catastrophic forgetting via EWC++

## Debugging

### Log Levels
\`\`\`bash
# Set log level
export CLAUDE_FLOW_LOG_LEVEL=debug

# Enable verbose mode
npx @claude-flow/cli --verbose <command>
\`\`\`

### Health Checks
\`\`\`bash
# Run diagnostics
npx @claude-flow/cli doctor --fix

# Check system status
npx @claude-flow/cli status
\`\`\`
`;
    return base + additionalSections;
}
/**
 * Generate enterprise AGENTS.md template with governance
 */
function generateEnterprise(options) {
    const full = generateFull(options);
    const enterpriseSections = `
## Governance

### Approval Workflow
All significant changes require:
1. Code review by designated reviewer
2. Security scan passing
3. Test coverage > 80%
4. Documentation update
5. Change request ticket linked

### Change Classification

| Class | Approval | Review Time | Examples |
|-------|----------|-------------|----------|
| Standard | Auto | <1 hour | Bug fixes, docs, config |
| Normal | 1 reviewer | <4 hours | Features, refactoring |
| Major | 2 reviewers | <24 hours | Architecture, security |
| Emergency | Skip + post-review | Immediate | Production hotfix |

### Audit Trail
All agent actions are logged to:
- \`/logs/agent-actions.log\` - Local file log
- \`/logs/audit.json\` - Structured JSON log
- Central audit system (if configured via AUDIT_ENDPOINT)

\`\`\`bash
# View recent agent actions
npx @claude-flow/cli logs --type agent-actions --last 1h

# Export audit log
npx @claude-flow/cli logs export --format json --output audit.json
\`\`\`

### Compliance

#### SOC2 Controls
- All actions timestamped with actor ID
- Immutable audit log retention (90 days minimum)
- Access control for sensitive operations
- Automated security scanning

#### GDPR Data Handling
- PII detection and masking in logs
- Data minimization in memory storage
- Right to erasure support in AgentDB
- Cross-border transfer controls

#### PCI-DSS (if applicable)
- No storage of card data in agent memory
- Encrypted communication for sensitive data
- Access logging for cardholder data operations
- Quarterly security reviews

### Role-Based Access Control (RBAC)

| Role | Permissions |
|------|-------------|
| Developer | Read, write source code, run tests |
| Lead | Developer + approve PRs, deploy to staging |
| Admin | Lead + deploy to production, manage config |
| Security | Audit logs, security scans, CVE remediation |
| Observer | Read-only access to logs and metrics |

\`\`\`bash
# Check current role
npx @claude-flow/cli claims list

# Request elevated permissions
npx @claude-flow/cli claims request --permission deploy:production
\`\`\`

## Service Level Agreements (SLAs)

### Agent Response Times

| Operation | Target | Max | Escalation |
|-----------|--------|-----|------------|
| Code generation | <5s | 30s | Alert on-call |
| Memory search | <100ms | 500ms | Log warning |
| Security scan | <60s | 5min | Queue retry |
| Test execution | <2min | 10min | Split test suite |

### Availability Targets
- Agent availability: 99.9% uptime
- Memory system: 99.99% availability
- MCP server: 99.5% uptime

## Incident Response

### Severity Levels

| Level | Description | Response Time | Notification |
|-------|-------------|---------------|--------------|
| P1 | Production down | <15 min | Page on-call |
| P2 | Major feature broken | <1 hour | Slack alert |
| P3 | Minor issue | <4 hours | Email |
| P4 | Cosmetic/docs | Next sprint | Ticket |

### On Security Issue
1. **Contain** - Immediately stop affected agents
   \`\`\`bash
   npx @claude-flow/cli agent stop --all --force
   \`\`\`
2. **Isolate** - Quarantine compromised resources
3. **Document** - Record timeline in incident log
4. **Notify** - Alert security team via configured channel
5. **Remediate** - Apply fix with expedited review
6. **Review** - Post-incident analysis within 48 hours

### On Production Bug
1. **Assess** - Determine impact and scope
2. **Decide** - Roll back if safe, or forward-fix
   \`\`\`bash
   # Rollback
   npx @claude-flow/cli deployment rollback --env production

   # Or forward-fix
   npx @claude-flow/cli workflow run hotfix
   \`\`\`
3. **Document** - Capture reproduction steps
4. **Fix** - Create hotfix on dedicated branch
5. **Validate** - Full regression test suite
6. **Deploy** - With expedited review process

### Communication Templates

\`\`\`markdown
# Incident Started
**Status**: Investigating
**Impact**: [Brief description]
**Started**: [Timestamp]
**Next Update**: [ETA]

# Incident Resolved
**Status**: Resolved
**Impact**: [Summary]
**Duration**: [Time]
**Root Cause**: [Brief description]
**Prevention**: [Actions taken]
\`\`\`

## Disaster Recovery

### Backup Strategy
- **Memory DB**: Hourly snapshots, 7-day retention
- **Configuration**: Version controlled, immutable
- **Agent State**: Checkpoint every 10 tasks

### Recovery Procedures
\`\`\`bash
# Restore from backup
npx @claude-flow/cli memory restore --snapshot latest

# Restore specific checkpoint
npx @claude-flow/cli session restore --checkpoint <id>
\`\`\`

### Recovery Time Objectives
| Component | RTO | RPO |
|-----------|-----|-----|
| Memory DB | <1 hour | <1 hour |
| Agent State | <15 min | <10 tasks |
| Configuration | <5 min | 0 (git) |

## Monitoring & Alerting

### Key Metrics
- Agent task completion rate
- Average response latency
- Error rate by type
- Memory usage trends
- Security scan findings

### Alert Thresholds
\`\`\`yaml
alerts:
  - name: high_error_rate
    condition: error_rate > 5%
    duration: 5m
    severity: critical

  - name: slow_response
    condition: p99_latency > 10s
    duration: 10m
    severity: warning

  - name: memory_pressure
    condition: memory_usage > 90%
    duration: 1m
    severity: critical
\`\`\`

## Training & Onboarding

### New Team Member Checklist
- [ ] Read this AGENTS.md document
- [ ] Complete security awareness training
- [ ] Set up local development environment
- [ ] Run \`npx @claude-flow/cli doctor\` to verify setup
- [ ] Complete first guided task with mentor
- [ ] Review incident response procedures

### Knowledge Base
- Internal wiki: [Link to wiki]
- Architecture Decision Records: \`/docs/adr/\`
- Runbooks: \`/docs/runbooks/\`
`;
    return full + enterpriseSections;
}
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